Benjamin Redelings


(2021) Redelings BD. BAli-Phy version 3: model-based co-estimation of alignment and phylogeny. Bioinformatics 37(18) [doi: 10.1093/bioinformatics/btab129]

(2020) Brazeau NF, Mitchell CL, Morgan AP, Deutsch-Feldman M, Watson OJ, Thwai KL, Waltmann A, Emch M, Gartner V, Redelings BD, Wray G, Mwandagalirwa MK, Tshefu AK, Likwela JL, Edwards JK, Verity R, Parr JB, Meshnick SR, Juliano JJ. The epidemiology of Plasmodium vivax among adults in the Democratic Republic of the Congo. Nat Commun 12:4169. [doi: 10.1038/s41467-021-24216-3]

(2017) McTavish EJ, Drew BT, Redelings BD, Cranston KA. How and Why to Build a Unified Tree of Life. BioEssays 39(11) [doi: 10.1002/bies.201700114]

(2017) Redelings BD, Holder MT. A supertree pipeline for summarizing phylogenetic and taxonomic information for millions of species. PeerJ [doi: 10.7717/peerj.3058]

(2015) Redelings BD, Kumagai SK, Wang L, Tatarenkov A, Sakai AK, Weller SG, Culley TM, Avise JC, Uyenoyama MK. A Bayesian Approach to Inferring Rates of Selfing and Locus-Specific Mutation. Genetics 201:1171-1188 [doi: 10.1534/genetics.115.179093]

(2014) Redelings BD. Erasing Errors Due to Alignment Ambiguity When Estimating Positive Selection. Mol. Biol. Evol. 31(8):1979-1993 [doi: 10.1093/molbev/msu174]

(2012) Sliwa L, Miadlikowska J, Redelings BD, Molnar K, and Lutzoni F. Are widespread morphospecies from the Lecanora dispersa group (lichen-forming Ascomycota) monophyletic? The Bryologist, 115:265-277. [10.1639/0007-2745-115.2.265]

(2012) Law SHW, Redelings BD, Kullman SW. Comparative Genomics of Duplicate γ-Glutamyl Transferase Genes in Teleosts: Medaka (Oryzias latipes), Stickleback (Gasterosteus aculeatus), Green Spotted Pufferfish (Tetraodon nigroviridis), Fugu (Takifugu rubripes), and Zebrafish (Danio rerio). JEZ part B, 318B(1):35-49, [doi: 10.1002/jez.b.21439]

(2012) Revell LJ, Mahler DL, Peres-Neto PR, and Redelings BD. A new method for identifying exceptional phenotypic diversification. Evolution, 66(1):135-146 [doi: 10.1111/j.1558-5646.2011.01435.x]

(2011) Gaya E, Redelings BD, Pere Navarro-Rosinés, Xavier Llimona, Miquel de Cáceres, Lutzoni F. Align, or not to align? Resolving species complexes within the Caloplaca saxicola group as a case study. Mycologia, 103(2):361-378. [doi: 10.3852/10-120]

(2009) Liang LJ, Weiss RE, Redelings BD, Suchard MA. Improving phylogenetic analyses by incorporating additional information from genetic sequence databases. Bioinformatics, 25(19):2530-2536. [WWW]

(2009) Lamm K, Redelings BD. Reconstructing ancestral ranges in historical biogeography: properties and prospects. Journal of Systematics and Evolution,47(5):369-382 [WWW]

(2008) Choi SC, Redelings BD, Thorne JL. Basing population genetic inferences and models of molecular evolution upon desired stationary distributions of DNA or protein sequences. Philosophical Transactions of the Royal Society B, 363(1512):3931-3939. [WWW]

(2007) Redelings BD, Suchard MA. Incorporating Indel Information into Phylogeny Estimation for Rapidly Emerging Pathogens. BMC Evolutionary Biology, 7:40 [WWW]

(2006) Suchard MA, Redelings BD. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics, 22(16):2047-2048 [WWW]

(2005) Redelings BD, Suchard MA. Joint Bayesian Estimation of Alignment and Phylogeny. Systematic Biology, 54(3):401-418 [WWW] [Winner of Mitchell Prize in 2006]

Book chapters

(2019) Redelings, BD, Holder, MT. Taxonomic Supertree Construction with Incertae sedis Taxa. Bioinformatics and Phylogenetics: Seminal Contributions of Bernard Moret, 29. Springer, Cham. pp. 151-173.

(2009) Redelings, BD, Suchard, MA. Robust inferences from Ambiguous Alignments. Sequence Alignment. University of California Press. pp. 209-270. [PDF]

Work in progress...